I tend to disagree with you here for a couple of reasons. First and foremost, I firmly believe that the core of any great university worth the name is the traditional liberal arts and sciences, and while that would include such disciplines as physics, chemistry or biology, it would also include philosophy, history, political science and foreign languages. Business, law, medical and engineering schools are secondary--necessary but secondary. To firm up my argument, I'd ask you to consider all of the great, American universities, and this is a partial off the top of my head list, that don't have business schools (Princeton) or don't allow undergraduate majors in the ones they do have (Harvard, Chicago and Yale). Princeton has no law or medical school. Chicago has no engineering college. The one thing they all do have in common is great depth and breadth of quality in their liberal arts departments. A great university--even a public one--is not a trade school.
You might be surprised to know that much of the faculty grumbling about Gee during his first tenure at Ohio State came from business, law, engineering and medicine. He looked at Ohio State and felt that the liberal arts and sciences needed to be strengthened to make the university as a whole reach its potential. The result is that we currently have top 15 departments (I'm probably missing a couple) in psychology and political science, top 25 departments in English, history, physics and chemistry and numerous other liberal arts departments ranking in the top 40 nationally.
At Brown, the source of his criticism was precisely the opposite. There he saw a university very strong in liberal arts and fine arts but one that lagged its peers in hard sciences and research. He set about strengthening the latter, which led to the outcry and backlash and his ultimately departure.
My point is that, regarding Gee's underlying philosophy, I don't think he has any ingrained favortism towards any one aspect of the university (althought he is willing to elimante programs that he feels don't contribute to the university's fundamental mission) but rather views the university holistically. He's been outstanding at assessing a university of which he's taken charge and identifying the areas that need to be brought up to speed. Sometimes, this benefits the liberal arts and sciences, and sometimes this benefits research or business, law and medicine.